Actividad funcional del tetrapéptido “YPWM” de antennapedia en la regulación de los genes blanco durante el desarrollo embrionario de Drosophila melanogaster

Los genes Hox codifican para una serie de factores transcripcionales, llamados homeoproteínas, que están involucrados en la regulación de los genes que participan en el desarrollo de los organismos. Las homeoproteínas comparten un dominio de unión al ADN, el homeodominio (HD), y en consecuencia reconocen secuencias de unión al ADN muy similares. Sin embargo estas homeoproteínas exhiben in vivo funciones biológicas altamente específicas. Se ha establecido que las homeoproteínas ganan especificidad mediante la cooperación con cofactores, con lo cual incrementan su afinidad de unión al ADN. El dominio YPWM es un motivo de interacción con cofactores que se encuentra altamente conservado en el extremo N-terminal del homeodominio de la mayoría de las homeoproteínas. El objetivo de este trabajo fue determinar la actividad funcional del motivo YPWM de la homeoproteína Antennapedia (Antp) en la activación/represión de sus genes blanco nativos y secuencias reguladoras en embriones de Drosophila melanogaster. Utilizando el sistema de regulación UAS/GAL4 se dirigió ectópicamente Antp en embriones de D. melanogaster para determinar mediante inmunohistoquímica y/inmunofluorescencia la expresión de los genes blanco teashirt (tsh), sex combs reduced (Scr) y en las secuencias reguladoras fkh[250con]-lacZ y tsh-lacZ. Los resultados mostraron que Antp ectópica activó la expresión de tsh, las secuencias reguladoras fkh[250con]-lacZ y tsh-lacZ, y reprimió la expresión de Scr en regiones anteriores de la cabeza. Interesantemente la proteína mutante en YPWM fue incapaz de activar a tsh, fkh[250con]-lacZ y de reprimir la expresión de Scr, sin embargo si fue capaz de activar a la secuencia reguladora de tsh-lacZ en regiones anteriores. Estos resultados nos permitieron concluir que la ausencia de los cuatro aminoácidos YPWM en Antp eliminó totalmente la actividad funcional de esta homeoproteína en los genes blancos analizados, posiblemente debido a la falta de interacción con sus cofactores. Asimismo, esta actividad crucial del YPWM de Antp en la regulación de sus genes blanco abre la posibilidad para estudiar la función en la regulación de otros genes blancos nativos, así como la identificación de los cofactores que podrían interactuar a través de este motivo en el complejo del desarrollo embrionario de D. melanogaster

Botteri\u27s Sparrow (Peucaea botterii) occurs in Northern Coahuila, Mexico

Botteri’s Sparrow (Peucaea botterii) occurs widely in the shrub-grasslands of southern North America. We report a breeding population of the species in the Sierra de la Encantada of northern Coahuila, Mexico, ~80 km from the Big Bend area of Texas and \u3e300 km from the nearest previously known breeding range in southern Coahuila and central Chihuahua. We captured three individuals, which show a mostly gray dorsal coloration, suggestive of the texana subspecies, occurring from southern Texas to northern Veracruz. The exact affinity of the northern Coahuila population still needs to be ascertained. The presence of Botteri’s Sparrow in northern Coahuila may have been overlooked previously or may be part of a (temporary) range expansion. More work is needed to map the occurrence of Botteri’s Sparrow in northcentral Mexico grasslands

A new species of Trachymyrmex (Hymenoptera, Formicidae) fungus-growing ant from the Sierra Madre Oriental of northeastern Mexico

Here we describe a new species of Trachymyrmex, T. pakawa sp. n., from the Gran Sierra Plegada range of the Sierra Madre Oriental, in the states of Coahuila and Nuevo Leon, northeastern Mexico. Trachymyrmex pakawa is a large-sized species compared to other North American Trachymyrmex. Its geographic distribution includes the piedmont of the Gran Sierra Plegada at La Estanzuela, Monterrey, as well as peripheral mountains segregated from the Sierra Madre Oriental (Cerro de las Mitras, Sierra de Zapalinamé, Cañon de San Lorenzo, Cerro de las Letras). The preferred habitats of T. pakawa include oak-pine forest at La Estanzuela, xeric oak forest at Zapalinamé and mesic Chihuahuan desert scrub with sotol (Dasylirion) at other sites. All localities are on slopes, on very rocky, shallow lithosols overlaying large boulders. This species nests under and between large boulders and rocks. It has not been observed on alluvial or better developed, deeper soils, and it is absent from sites with human activity (urban, disturbed, and landscaped areas). It is closely related to and morphologically similar to Trachymyrmex smithi. The known distribution ranges of T. pakawa and T. smithi almost overlap in Saltillo, Coahuila state. The main character that distinguishes the new species from T. smithi is longer antennal scapes in T. pakawa; also, different nesting habits (rocky slopes vs. alluvial sites or deep sand in T. smithi), and geographic distribution. Phylogenetic analysis of DNA sequences from the mitochondrial marker cytochrome c oxidase subunit I (COI) and the first intron of the F1 copy of the nuclear protein-coding gene Elongation Factor 1- α (EF1-α-F1) confirm a sister-species relationship between T. pakawa and T. smithi. Bayesian coalescent analyses indicate a divergence time of about 8.00 million years before present (95% confidence interval: 4.8–11.5 mya) between T. pakawa and T. smithi. The divergence of the lineages of T. pakawa and T. smithi could have been driven by the Pliocene-Holocene desertification of southwestern North America. This process resulted in isolated mesic refugia and forests in the Madrean ranges and piedmonts of northeastern Mexico (the current habitat of T. pakawa) while T. smithi adapted to the deeper, often sandy soils on the drier desert plains of Coahuila and Chihuahua states in Mexico, and New Mexico and Texas in the USA. Within the Nearctic species of the Trachymyrmex septentrionalis species group, T. pakawa is the species that is closest (by geographical distribution) to Neotropical species of Trachymyrmex like T. saussurei

High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis

The phylum Actinobacteria constitutes one of the largest and anciently divergent phyla within the Bacteria domain. Actinobacterial diversity has been thoroughly researched in various environments due to its unique biotechnological potential. Such studies have focused mostly on soil communities, but more recently marine and extreme environments have also been explored, finding rare taxa and demonstrating dispersal limitation and biogeographic patterns for Streptomyces. To test the distribution of Actinobacteria populations on a small scale, we chose the extremely oligotrophic and biodiverse Cuatro Cienegas Basin (CCB), an endangered oasis in the Chihuahuan desert to assess the diversity and uniqueness of Actinobacteria in the Churince System with a culture-dependent approach over a period of three years, using nine selective media. The 16S rDNA of putative Actinobacteria were sequenced using both bacteria universal and phylum-specific primer pairs. Phylogenetic reconstructions were performed to analyze OTUs clustering and taxonomic identification of the isolates in an evolutionary context, using validated type species of Streptomyces from previously phylogenies as a reference. Rarefaction analysis for total Actinobacteria and for Streptomyces isolates were performed to estimate species' richness in the intermediate lagoon (IL) in the oligotrophic Churince system. A total of 350 morphologically and nutritionally diverse isolates were successfully cultured and characterized as members of the Phylum Actinobacteria. A total of 105 from the total isolates were successfully subcultured, processed for DNA extraction and 16S-rDNA sequenced. All strains belong to the order Actinomycetales, encompassing 11 genera of Actinobacteria; the genus Streptomyces was found to be the most abundant taxa in all the media tested throughout the 3- year sampling period. Phylogenetic analysis of our isolates and another 667 reference strains of the family Streptomycetaceae shows that our isolation effort produced 38 unique OTUs in six new monophyletic clades. This high biodiversity and uniqueness of Actinobacteria in an extreme oligotrophic environment, which has previously been reported for its diversity and endemicity, is a suggestive sign of microbial biogeography of Actinobacteria and it also represents an invaluable source of biological material for future ecological and bioprospecting studies

Dense geographic and genomic sampling reveals paraphyly and a cryptic lineage in a classic sibling species complex

Incomplete or geographically biased sampling poses significant problems for research in phylogeography, population genetics, phylogenetics, and species delimitation. Despite the power of using genome-wide genetic markers in systematics and related fields, approaches such as the multispecies coalescent remain unable to easily account for unsampled lineages. The Empidonax difficilis/Empidonax occidentalis complex of small tyrannid flycatchers (Aves: Tyrannidae) is a classic example of widely distributed species with limited phenotypic geographic variation that was broken into two largely cryptic (or "sibling") lineages following extensive study. Though the group is well-characterized north of the US Mexico border, the evolutionary distinctiveness and phylogenetic relationships of southern populations remain obscure. In this article, we use dense genomic and geographic sampling across the majority of the range of the E. difficilis/E. occidentalis complex to assess whether current taxonomy and species limits reflect underlying evolutionary patterns, or whether they are an artifact of historically biased or incomplete sampling. We find that additional samples from Mexico render the widely recognized species-level lineage E. occidentalis paraphyletic, though it retains support in the best-fit species delimitation model from clustering analyses. We further identify a highly divergent unrecognized lineage in a previously unsampled portion of the group's range, which a cline analysis suggests is more reproductively isolated than the currently recognized species E. difficilis and E. occidentalis. Our phylogeny supports a southern origin of these taxa. Our results highlight the pervasive impacts of biased geographic sampling, even in well-studied vertebrate groups like birds, and illustrate what is a common problem when attempting to define species in the face of recent divergence and reticulate evolution

Winter diet of the long-eared owl Asio otus (Strigiformes: Strigidae) in the grasslands of Janos, Chihuahua, Mexico

Abstract Background: The long-eared owl (Asio otus) has a Holarctic distribution, including much of North America. This nocturnal species is considered to be extremely secretive, and poorly known in the Great Plains of the United States and Canada, as well as to México, where no previous studies on its diet have been conducted. Findings: We analyzed 120 pellets collected during January 2007 in roosts in a 2–3 m height mesquite scrub within a grassland area of Reserva Ecológica El Uno, located in the Natural Protected Area Janos. We registered and identified three orders, four families, eight genera and ten species of mammals and two orders and one family of insects. Winter diet is dominated by mammals, especially rodents in both frequency and biomass. Cricetidae and Perognathus flavus were the most frequent family and species, respectively. On the other hand, when analyzing biomass, Sigmodon species were dominant, achieving almost 70% of the consumed biomass. Levin's standardized niche breath based on frequency was calculated as 0.40, while based on biomass was 0.38. Also, two previously unrecorded rodent species were identified as long-eared owl prey. Conclusion: Although 18 different types of items were identified, the long-eared owl tends to be selective, with a single genera (Sigmodon) comprising almost 70% of its consumed biomass during winter. Perognathus flavus was also important in frequency (21%); however, it barely constitutes 2% of the consumed biomass. Keywords: Winter diet, Long-eared owl, Grasslands, Janos, México Resumen El búho orejas largas es una especie Holártica, que se distribuye en gran parte de Norteamérica y que ha sido poco estudiada, especialmente en las Grandes Planicies de Estados Unidos y en México, donde no existe un estudio previo sobre su dieta invernal. Se colectaron y analizaron 120 egagrópilas en la Reserva Ecológica El Uno, dentro del Área Natural Protegida Reserva de la Biósfera Janos. Se identificaron un total de 18 tipos de presa, pero la especie mostró selectividad por dos géneros/especies, ya que cerca del 70% de la biomasa consumida fueron especies del género Sigmodon, mientras que el 21% de las muestras contenían Perognathus flavus. Además, dos especies de roedores identificadas constituyen nuevos registros de presa para la especie